PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g32070
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 361aa    MW: 39929.2 Da    PI: 8.225
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g32070genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.51.5e-29169229160
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                 ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs ed+++++ tYegeHnh+k
  CA03g32070 169 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApTCPVKKKVQRSVEDQSILVATYEGEHNHSK 229
                 58***************************99****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-28160229IPR003657WRKY domain
PROSITE profilePS5081125.04164230IPR003657WRKY domain
SuperFamilySSF1182901.57E-24166228IPR003657WRKY domain
SMARTSM007742.0E-33169229IPR003657WRKY domain
PfamPF031068.5E-24170227IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0009611Biological Processresponse to wounding
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEFTSLVDTS LDLSFRPLRV PDDIPKQEVE SNFIGLGRDL MPDKDDQAGD LLEELNRVSA  60
ENKKLTEMLT VMCQNYNALR NQLTEYLNKQ NSTTSTAADN NHDHHSDGSK KRKVENNNNE  120
IVKSVQGLHS ESSSSDEDSS NKKPREQHIK TNTCRVYVKT EASDTSLIVK DGYQWRKYGQ  180
KVTRDNPSPR AYFKCSFAPT CPVKKKVQRS VEDQSILVAT YEGEHNHSKM DGSGPVTTSP  240
SSRLNPKNTL VGANTTTVMP CSSTSIINTP SGPTLTLDLT QPKKLQNDQK KVNSNTSTSN  300
ASGQKSKSPG GHDHHQQNRP EFQQLFIDQM ASSLTKDPSF QAALAAAISG KFLQNNHTDK  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-201682271371WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00251DAPTransfer from AT1G80840Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2492550.0GQ249255.1 Capsicum annuum WRKYd transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562883.10.0PREDICTED: probable WRKY transcription factor 40
TrEMBLD7NPU80.0D7NPU8_CAPAN; WRKYd transcription factor
STRINGPGSC0003DMT4000510470.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28552450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.19e-89WRKY DNA-binding protein 40